| 108 | SP Fleming | New Zealand v South Africa at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 92* | MHW Papps | New Zealand v South Africa at Napier, 6th ODI, 02/03/2004 [2109] |
| 80 | GC Smith | South Africa v New Zealand at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 74 | HJH Marshall | New Zealand v South Africa at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 72 | GC Smith | South Africa v New Zealand at Auckland, 1st ODI, 13/02/2004 [2099] |
| 70* | CD McMillan | New Zealand v South Africa at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 70* | JA Rudolph | South Africa v New Zealand at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 69 | HH Gibbs | South Africa v New Zealand at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 69 | SB Styris | New Zealand v South Africa at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 67 | MHW Papps | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 60 | SB Styris | New Zealand v South Africa at Auckland, 1st ODI, 13/02/2004 [2099] |
| 58* | JH Kallis | South Africa v New Zealand at Auckland, 5th ODI, 29/02/2004 [2107] |
| 58 | CL Cairns | New Zealand v South Africa at Auckland, 1st ODI, 13/02/2004 [2099] |
| 55 | CZ Harris | New Zealand v South Africa at Auckland, 5th ODI, 29/02/2004 [2107] |
| 51 | SP Fleming | New Zealand v South Africa at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 50 | N Boje | South Africa v New Zealand at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 48* | MV Boucher | South Africa v New Zealand at Auckland, 5th ODI, 29/02/2004 [2107] |
| 47 | AG Prince | South Africa v New Zealand at Napier, 6th ODI, 02/03/2004 [2109] |
| 45* | SB Styris | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 45* | AG Prince | South Africa v New Zealand at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 44* | HH Dippenaar | South Africa v New Zealand at Auckland, 1st ODI, 13/02/2004 [2099] |
| 43 | HH Gibbs | South Africa v New Zealand at Auckland, 1st ODI, 13/02/2004 [2099] |
| 43 | SP Fleming | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 43 | GC Smith | South Africa v New Zealand at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 42* | M Ntini | South Africa v New Zealand at Napier, 6th ODI, 02/03/2004 [2109] |
| 42 | JA Rudolph | South Africa v New Zealand at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 41* | BB McCullum | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 40 | MV Boucher | South Africa v New Zealand at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 37 | GC Smith | South Africa v New Zealand at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 36 | HH Dippenaar | South Africa v New Zealand at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 35 | MV Boucher | South Africa v New Zealand at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 35 | L Klusener | South Africa v New Zealand at Napier, 6th ODI, 02/03/2004 [2109] |
| 32 | SP Fleming | New Zealand v South Africa at Napier, 6th ODI, 02/03/2004 [2109] |
| 30 | SP Fleming | New Zealand v South Africa at Auckland, 1st ODI, 13/02/2004 [2099] |
| 29* | SM Pollock | South Africa v New Zealand at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 29* | CL Cairns | New Zealand v South Africa at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 29 | MHW Papps | New Zealand v South Africa at Dunedin, 4th ODI, 25/02/2004 [2104] |
| 28 | CL Cairns | New Zealand v South Africa at Auckland, 5th ODI, 29/02/2004 [2107] |
| 26 | JH Kallis | South Africa v New Zealand at Auckland, 1st ODI, 13/02/2004 [2099] |
| 24 | JA Rudolph | South Africa v New Zealand at Auckland, 1st ODI, 13/02/2004 [2099] |
| 24 | SB Styris | New Zealand v South Africa at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 24 | N Boje | South Africa v New Zealand at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 23* | JA Morkel | South Africa v New Zealand at Napier, 6th ODI, 02/03/2004 [2109] |
| 22* | CZ Harris | New Zealand v South Africa at Napier, 6th ODI, 02/03/2004 [2109] |
| 22 | JDP Oram | New Zealand v South Africa at Auckland, 5th ODI, 29/02/2004 [2107] |
| 20* | SM Pollock | South Africa v New Zealand at Christchurch, 2nd ODI, 17/02/2004 [2100] |
| 20 | CL Cairns | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |
| 20 | JDP Oram | New Zealand v South Africa at Wellington, 3rd ODI, 20/02/2004 [2101] |